Hey, I'm

Narges Rezaie

Post-doc fellow researcher at UC Irvine in Mortazavi Lab Bioinformatics Computational Biologist Pacakge/Software Developement Data Analyst

More About Me
About

Let me introduce myself.

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I am a Postdoc at the University of California, Irvine in Mathematical, Computational System Biology program (MCSB) in the Mortazavi lab.
I Graduated from Sharif University of Technology in 2018 with a B.S. in Information Technology, Computer Engineering. Coming from computational background, I'm mostly analysing different type of data inclusing bulk and single-cell RNA-seq data and developing software/pipeline.
My lab is part of a NIA Consortium to build better late-onset Alzheimer’s Disease models in mouse and I'm mostly in charge of developing and implementing standardized data acquisition and data analysis protocols for the UCI model-AD data such as single-cell transcriptomics in these new models.
My lab is also part of a ENCODE Consortium and IGVF (Impact of Genomic Variation on Function) Consortium to build better late-onset Alzheimer’s Disease models in mouse and I'm mostly in charge of developing and implementing data analysis protocols as well as devloping software/packages especially for short bulk and single-cell transcriptomics.
Out of work, I love to spend time with our kittens, go camping, hike and cook presion dishes.

Profile

Selected Skills

For more informations download my CV.

  • 100%
    Python
  • 100%
    R
  • 100%
    Java
  • 85%
    shinyapps
  • 85%
    Flask

More of my experiences.

Education

Direct PhD

2019-2024

University of California, Irvine

In Mathematical, Computational System Biology program (MCSB)
Gpa: 3.98/4

Bachelor's Degree

2014-2018

Sharif university of technology

In Information Technology, Computer Engineering
Gpa: 17.07/20

Diploma

2010-2014

Farzanegan Amin high school, National Organization for Development of Exceptional Talents(NODET)

In Mathematics
Gpa: 19.90/20

Research Experience

Psot-doc/Research Assistant

Mortazavi Lab

2019-present

Model AD

We are part of a NIA Consortium to build better late-onset Alzheimer’s Disease models in mouse. I mostly invovle in bioinformatics parts as well as single-cell transcriptomics in these new models.

IGVF

We are leveraging mouse genetic diversity to study the impact of genotype on molecular function in a variety of tissues using single-cell resolution.

Gene Regulatory Networks

I'm trying to build models of gene regulatory networks using either bulk or single-cell RNA-seq, and ATAC-seq in human, rodents, and other vertebrates in order to discover how the logic of development is encoded in the genome.

ENCODE Consortium

We are part of a ENCODE Consortium to build and analyse various type of data including short and long RNA-seq. As a member of this Consortium, I'm intersted in analysing them to understand how gene expression and chromatin states change during time.

Research Assistant

Bioinformatics and Computational Biology Lab

2016 - 2018

Statistical Analysis of Clinical Data - Golestan Cohort

Available in Github

Designing a statistical model to predict risk of cardiovascular disease

Publication

Look at my Google scholar and my ORCiD.

Contact
Where to find me

2218 Biological Sciences III,
University of California Irvine,
Irvine, CA 92697-2300

Email Me At

nargesr@uci.edu

Call Me At

(949) 426-8112